Signaling state of Photoactive Yellow Protein
SOLUTION NMR - SOLUTION SCATTERING
| Solution Scattering Data Acquistion | 1 |
|---|---|
| Scattering Type | x-ray |
| Radiation/Neutron Source | ESRF |
| Synchrotron | Y |
| Beamline Type | ID09B |
| Detector Type | CCD |
| Detector Manufacturer Details | Mar133: MAR RESEARCH |
| Temperature (K) | 293 |
| pH | 7 |
| Numer of Time Frames Used | |
| Protein Concentration Range (mg/mL) | 64 |
| Sample Buffer | 20 MM NACL |
| Data Reduction Software | |
| Guiner Mean Radius Of Gyration (nm) | 1.46 |
| Sigma Mean Radius Of Gyration | |
| R(XS-1) Mean Cross Sectional Radii (nm) | |
| R(XS-1) Sigma Mean Cross Sectional Radii | |
| R(XS-2) Mean Cross Sectional Radii (nm) | |
| R(XS-2) Sigma Mean Cross Sectional Radii | |
| P(R) Protein Length (nm) |
| Solution Scattering Data Analysis and Model Fitting | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Method | Software | Software Authors | Starting Model | Conformers, Number Calculated | Conformers, Number Submitted | Conformers, Selection Criteria | Best Representative Conformer | Other Details | |||||||||||
| CNS (NIH SAXS version) | Grishaev, Wu, Trewhella, Bax, Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren | 15 | 14 | STRUCTUREs WITH THE LEAST RESTRAINT VIOLATIONS | 1 | ||||||||||||||
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 75 uM PYP, 50 mM potassium phosphate | 95% H2O/5% D2O | 0 | 5.75 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE II | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 15 |
| Conformers Submitted Total Number | 14 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 2 | data analysis | DEERANALYSIS2006 | Gunnar Jeschke | |
| 3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
