2KJL

NMR structures of a designed Cyanovirin-N homolog lectin; LKAMG


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 15N-1H HSQC0.5 mM [U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
23D CBCANH1.2 mM [U-100% 13C; U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
33D CBCA(CO)NH1.2 mM [U-100% 13C; U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
43D HCCH-TOCSY1.2 mM [U-100% 13C; U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
53D H(c)CH-NH TOCSY1.2 mM [U-100% 13C; U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
6(h)CCH-NH TOCSY1.2 mM [U-100% 13C; U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
73D HBHA(CO)NH1.2 mM [U-100% 13C; U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
83D simultaneous 15N/13C NOESY-HSQC1.2 mM [U-100% 13C; U-100% 15N] LKAMG20mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O06.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE700
2BrukerAVANCE800
3BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
CNS simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteria30 structures with lowest energy
Conformers Calculated Total Number800
Conformers Submitted Total Number30
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNS1.1Brunger A. T. et.al.
2automatic noe calibrationCYANA2.1Guntert, Mumenthaler and Wuthrich
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4data analysisTALOSCornilescu, Delaglio and Bax