Experiment: 2KAW

NMR structure of the mDvl1 PDZ domain in complex with its inhibitor

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D_13C-F1_HALF_FILTERED_F2_EDIT	1MM MDVL1 PDZ DOMAIN U-15N,13C, 10 MM SUZ, 100MM PHOSPHATE BUFFER PH 7.5, 90% H2O, 10% D2O	90% H2O/10% D2O	100	7.5	AMBIENT	293
2	2D 1H-15N HSQC	1MM MDVL1 PDZ DOMAIN U-15N,13C, 10 MM SUZ, 100MM PHOSPHATE BUFFER PH 7.5, 90% H2O, 10% D2O	90% H2O/10% D2O	100	7.5	AMBIENT	293
3	2D 1H-13C HSQC	1MM MDVL1 PDZ DOMAIN U-15N,13C, 10 MM SUZ, 100MM PHOSPHATE BUFFER PH 7.5, 90% H2O, 10% D2O	90% H2O/10% D2O	100	7.5	AMBIENT	293
4	3D CBCA(CO)NH	1MM MDVL1 PDZ DOMAIN U-15N,13C, 10 MM SUZ, 100MM PHOSPHATE BUFFER PH 7.5, 90% H2O, 10% D2O	90% H2O/10% D2O	100	7.5	AMBIENT	293
5	3D HNCO	1MM MDVL1 PDZ DOMAIN U-15N,13C, 10 MM SUZ, 100MM PHOSPHATE BUFFER PH 7.5, 90% H2O, 10% D2O	90% H2O/10% D2O	100	7.5	AMBIENT	293
6	3D CBCA(CO)NH	1MM MDVL1 PDZ DOMAIN U-15N,13C, 10 MM SUZ, 100MM PHOSPHATE BUFFER PH 7.5, 90% H2O, 10% D2O	90% H2O/10% D2O	100	7.5	AMBIENT	293
7	3D HCCH-TOCSY	1MM MDVL1 PDZ DOMAIN U-15N,13C, 10 MM SUZ, 100MM PHOSPHATE BUFFER PH 7.5, 90% H2O, 10% D2O	90% H2O/10% D2O	100	7.5	AMBIENT	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800
3	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing, HADDOCK	NOE distance violation (<0.5A)	HADDOCK

NMR Ensemble Information
Conformer Selection Criteria	LOWEST ENERGY CONFORMATION
Conformers Calculated Total Number	2000
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Additional NMR Experimental Information
Details	THE STRUCTURE WAS DETERMINED WITH HADDOCK USING BASED ON A TOTAL OF 55 RESTRAINTS: 45 INTERMOLECULAR DISTANCE CONTRAINTS, 7 INTRAMOLECULAR DISTANCE CONTRAINTS FOR SMALL MOLECULE, AND 3 ARE DISTANCE RESTRAINTS FROM HYDROGEN BONDS

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	HADDOCK	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	HADDOCK	1.2	Dominguez, Boelens, Bonvin
3	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	chemical shift assignment	SPAKY	3.1	Goddard
5	refinement	HADDOCK	1.2	Dominguez, Boelens, Bonvin