2K5B
Human CDC37-HSP90 docking model based on NMR
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.8mM [U-100% 15N] human HSP90, 0.8mM [U-100% 15N] human CDC37, 50mM HEPES, 100mM sodium chloride, 1mM DTT | 90% H2O/10% D2O | 100 | 7.4 | ambient | 298 | |
| 2 | 3D 1H-15N NOESY | 0.8mM [U-100% 15N, U-100% 2H] human HSP90, 0.8mM human CDC37, 50mM HEPES, 100mM sodium chloride, 1mM DTT | 90% H2O/10% D2O | 100 | 7.4 | ambient | 298 | |
| 3 | 3D 1H-15N NOESY | 0.8mM human HSP90, 0.8mM [U-100% 15N, U-100% 2H] human CDC37, 50mM HEPES, 100mM sodium chloride, 1mM DTT | 90% H2O/10% D2O | 100 | 7.4 | ambient | 298 | |
| 4 | IPAP(1H,15N)HSQC | 0.8mM [U-100% 15N] human HSP90, 0.8mM [U-100% 15N] human CDC37, 50mM HEPES, 100mM sodium chloride, 1mM DTT | 90% H2O/10% D2O | 100 | 7.4 | ambient | 298 | |
| 5 | IPAP(1H,15N)HSQC | 0.8mM [U-100% 15N] human HSP90, 0.8mM [U-100% 15N] human CDC37, 50mM HEPES, 100mM sodium chloride, 1mM DTT | 90% H2O/10% D2O | 100 | 7.4 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 900 |
| 2 | Bruker | AVANCE | 800 |
| 3 | Bruker | AVANCE | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, torsion angle dynamics | The structure was calculated using HADDOCK Details can be found in the jrnl citation above | TopSpin |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the best HADDOCK scoring |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (best haddock score) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | 2.1 | Bruker Biospin |
| 2 | processing | TopSpin | 2.1 | Bruker Biospin |
| 3 | data analysis | Sparky | 3.113 | Goddard |
| 4 | peak picking | Sparky | 3.113 | Goddard |
| 5 | data analysis | CARA | 1.8.3 | Keller and Wuthrich |
| 6 | peak picking | CARA | 1.8.3 | Keller and Wuthrich |
| 7 | structure solution | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 8 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 9 | geometry optimization | HADDOCK | 2.0 | A. Bonvin & C. Dominguez |
| 10 | refinement | HADDOCK | 2.0 | Dominguez, Boelens and Bonvin |
| 11 | structure solution | HADDOCK | 2.0 | A. Bonvin & C. Dominguez |
