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Solution Structure of Tick Carboxypeptidase Inhibitor
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-1H NOESY
0.76 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
2
2D 1H-1H TOCSY
0.76 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
3
2D 1H-1H COSY
0.76 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
4
2D 1H-15N HSQC
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
5
3D 1H-15N NOESY
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
6
3D 1H-15N TOCSY
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
7
2D 1H-1H NOESY
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
8
2D 1H-1H TOCSY
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
9
2D 1H-15N HSQC
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
10
3D HNHA
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
11
3D HNHB
0.7 mM [U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
12
2D 1H-15N HSQC
0.1 mM [U-100% 13C; U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
13
2D 1H-13C HSQC
0.1 mM [U-100% 13C; U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
14
3D HNCO
0.1 mM [U-100% 13C; U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
15
3D CBCA(CO)NH
0.1 mM [U-100% 13C; U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
16
3D HNCACB
0.1 mM [U-100% 13C; U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
17
3D C(CO)NH
0.1 mM [U-100% 13C; U-100% 15N] TCI
95% H2O/5% D2O
78.4
5.6
ambient
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
600
2
Bruker
AVANCE
700
NMR Refinement
Method
Details
Software
torsion angle dynamics
stucture calculation with torsion angel dynamics, the 20 conformers with the lowest final CYANA target were subjected to restrained energy minimization energy in vacuo with the program AMBER7
XwinNMR
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
20
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
collection
XwinNMR
3.5
Bruker Biospin
2
processing
XwinNMR
3.5
Bruker Biospin
3
processing
NMRPipe
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4
processing
NMRDraw
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5
chemical shift calculation
MARS
Jung adn Markus Zweckstetter
6
chemical shift calculation
GARANT
Bartels, Guntert, Billeter and Wuthrich
7
data analysis
NMRView
Johnson, One Moon Scientific
8
peak picking
NMRView
Johnson, One Moon Scientific
9
chemical shift assignment
NMRView
Johnson, One Moon Scientific
10
data analysis
TALOS
Cornilescu, Delaglio and Bax
11
structure solution
CYANA
Guntert, Mumenthaler and Wuthrich
12
refinement
Amber
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll