2JG1

STRUCTURE OF Staphylococcus aureus D-TAGATOSE-6-PHOSPHATE KINASE with cofactor and substrate

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		6.5		0.2 M MAGNESIUM ACETATE TETRAHYDRATE, 0.1 M SODIUM CACODYLATE PH 6.5, 10% PEG 8000, 15% PEG 550, 10 MM ATP.

Crystal Properties
Matthews coefficient	Solvent content
2.3	50

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 95.2	α = 90
b = 97.09	β = 90
c = 154.47	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID14-2		ESRF	ID14-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	24.8	99.8	0.09	7.6	10.9		96948

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.12	99.8		0.62	1.2	9.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2	24.85	92089	4857	99.8	0.192	0.19	0.234	RANDOM	31.09

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.01					-0.01

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.15
r_dihedral_angle_4_deg	17.057
r_dihedral_angle_3_deg	14.549
r_dihedral_angle_1_deg	5.71
r_scangle_it	2.267
r_scbond_it	1.482
r_angle_refined_deg	1.234
r_mcangle_it	1.047
r_mcbond_it	0.663
r_nbtor_refined	0.296
r_nbd_refined	0.186
r_symmetry_vdw_refined	0.15
r_symmetry_hbond_refined	0.145
r_xyhbond_nbd_refined	0.139
r_chiral_restr	0.076
r_metal_ion_refined	0.072
r_bond_refined_d	0.009
r_gen_planes_refined	0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9701
Nucleic Acid Atoms
Solvent Atoms	875
Heterogen Atoms	145

Software

Software
Software Name	Purpose
SHARP	model building
XSCALE	data scaling
XPREP	phasing
SHELXD	phasing
SHELXE	phasing
SHARP	phasing
REFMAC	refinement