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STRUCTURE OF Staphylococcus aureus D-TAGATOSE-6-PHOSPHATE KINASE with cofactor and substrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.2 M MAGNESIUM ACETATE TETRAHYDRATE, 0.1 M SODIUM CACODYLATE PH 6.5, 10% PEG 8000, 15% PEG 550, 10 MM ATP.
Crystal Properties Matthews coefficient Solvent content 2.3 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.2 α = 90 b = 97.09 β = 90 c = 154.47 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 24.8 99.8 0.09 7.6 10.9 96948
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 99.8 0.62 1.2 9.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 24.85 92089 4857 99.8 0.192 0.19 0.1892 0.234 0.2301 RANDOM 31.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.15 r_dihedral_angle_4_deg 17.057 r_dihedral_angle_3_deg 14.549 r_dihedral_angle_1_deg 5.71 r_scangle_it 2.267 r_scbond_it 1.482 r_angle_refined_deg 1.234 r_mcangle_it 1.047 r_mcbond_it 0.663 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.15 r_dihedral_angle_4_deg 17.057 r_dihedral_angle_3_deg 14.549 r_dihedral_angle_1_deg 5.71 r_scangle_it 2.267 r_scbond_it 1.482 r_angle_refined_deg 1.234 r_mcangle_it 1.047 r_mcbond_it 0.663 r_nbtor_refined 0.296 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.15 r_symmetry_hbond_refined 0.145 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.076 r_metal_ion_refined 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9701 Nucleic Acid Atoms Solvent Atoms 875 Heterogen Atoms 145
Software Software Software Name Purpose SHARP model building XSCALE data scaling XPREP phasing SHELXD phasing SHELXE phasing SHARP phasing REFMAC refinement