2JET

Crystal structure of a trypsin-like mutant (S189D , A226G) chymotrypsin.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7293VAPOR DIFFUSION METHOD, 0.1M HEPES, PH 7.0, 30% PEG6000 AND PROTEIN (15 MG/ML) WITH BENZAMIDINE TWOFOLD EXCESS MIXED 1:1, 20 C
Crystal Properties
Matthews coefficientSolvent content
1.935.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.69α = 90
b = 64.351β = 102.09
c = 44.224γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4MIRRORS2005-02-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.264.4298.50.0910.23.197532
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.3295.80.442.32.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1KDQ2.243.23914546198.50.2790.2760.334RANDOM44.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.130.43-0.320.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.622
r_dihedral_angle_3_deg11.69
r_dihedral_angle_4_deg6.371
r_dihedral_angle_1_deg4.57
r_angle_other_deg1.107
r_angle_refined_deg0.824
r_nbtor_refined0.156
r_nbd_other0.155
r_nbd_refined0.145
r_symmetry_vdw_other0.128
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.622
r_dihedral_angle_3_deg11.69
r_dihedral_angle_4_deg6.371
r_dihedral_angle_1_deg4.57
r_angle_other_deg1.107
r_angle_refined_deg0.824
r_nbtor_refined0.156
r_nbd_other0.155
r_nbd_refined0.145
r_symmetry_vdw_other0.128
r_chiral_restr0.114
r_scangle_it0.113
r_nbtor_other0.078
r_symmetry_vdw_refined0.074
r_xyhbond_nbd_refined0.07
r_scbond_it0.07
r_mcangle_it0.048
r_mcbond_it0.041
r_symmetry_hbond_refined0.019
r_bond_refined_d0.005
r_bond_other_d0.001
r_gen_planes_refined0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1700
Nucleic Acid Atoms
Solvent Atoms67
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing