X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.225% PEG 3350, 0.1M SODIUM CACODYLATE PH 6.4, 300MM AMMONIUM ACETATE
Crystal Properties
Matthews coefficientSolvent content
2.448

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.957α = 90
b = 104.459β = 98.52
c = 241.478γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU IMAGE PLATEOSMIC MIRRORS2005-04-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.64597.50.0741.72.952468
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.783.40.1311.22.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.6235.749749265997.50.1260.1230.193RANDOM13
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.81-0.480.23-1.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.883
r_dihedral_angle_4_deg16.118
r_dihedral_angle_3_deg15.146
r_dihedral_angle_1_deg4.781
r_scangle_it2.042
r_scbond_it1.403
r_angle_refined_deg1.124
r_mcangle_it0.948
r_angle_other_deg0.815
r_mcbond_it0.608
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.883
r_dihedral_angle_4_deg16.118
r_dihedral_angle_3_deg15.146
r_dihedral_angle_1_deg4.781
r_scangle_it2.042
r_scbond_it1.403
r_angle_refined_deg1.124
r_mcangle_it0.948
r_angle_other_deg0.815
r_mcbond_it0.608
r_symmetry_vdw_refined0.224
r_nbd_refined0.196
r_nbtor_refined0.18
r_symmetry_vdw_other0.178
r_symmetry_hbond_refined0.178
r_xyhbond_nbd_refined0.169
r_nbd_other0.165
r_nbtor_other0.081
r_chiral_restr0.071
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11008
Nucleic Acid Atoms
Solvent Atoms1652
Heterogen Atoms192

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing