X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5100MM BISTRIS PH 6.5, 25% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.2544.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.548α = 90
b = 292.927β = 90
c = 37.126γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRROR2004-02-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.356098.50.15.412.9393691
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.4890.60.232.75.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1EVH WITHOUT FP4 LIGAND2.3564.963111515871000.2020.1990.259RANDOM27.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.098-0.0220.121
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.233
r_dihedral_angle_4_deg16.502
r_dihedral_angle_3_deg15.296
r_dihedral_angle_1_deg8.595
r_scangle_it1.885
r_angle_refined_deg1.346
r_scbond_it1.174
r_mcangle_it0.961
r_mcbond_it0.554
r_nbtor_refined0.301
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.233
r_dihedral_angle_4_deg16.502
r_dihedral_angle_3_deg15.296
r_dihedral_angle_1_deg8.595
r_scangle_it1.885
r_angle_refined_deg1.346
r_scbond_it1.174
r_mcangle_it0.961
r_mcbond_it0.554
r_nbtor_refined0.301
r_nbd_refined0.218
r_symmetry_vdw_refined0.188
r_xyhbond_nbd_refined0.147
r_symmetry_hbond_refined0.137
r_chiral_restr0.126
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5387
Nucleic Acid Atoms
Solvent Atoms384
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing