2IWK

Inhibitor-bound form of nitrous oxide reductase from Achromobacter Cycloclastes at 1.7 Angstrom resolution


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.0840.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.114α = 90
b = 120.913β = 90
c = 137.343γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75098.40.147.84.21286672

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.750121914645798.30.170.1680.207RANDOM20.56
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.18-0.530.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.197
r_dihedral_angle_4_deg15.355
r_dihedral_angle_3_deg13.114
r_dihedral_angle_1_deg6.686
r_scangle_it3.856
r_scbond_it2.468
r_angle_refined_deg1.587
r_mcangle_it1.469
r_angle_other_deg0.858
r_mcbond_it0.855
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.197
r_dihedral_angle_4_deg15.355
r_dihedral_angle_3_deg13.114
r_dihedral_angle_1_deg6.686
r_scangle_it3.856
r_scbond_it2.468
r_angle_refined_deg1.587
r_mcangle_it1.469
r_angle_other_deg0.858
r_mcbond_it0.855
r_nbd_refined0.219
r_nbd_other0.208
r_symmetry_vdw_other0.194
r_nbtor_refined0.174
r_xyhbond_nbd_refined0.16
r_symmetry_hbond_refined0.146
r_chiral_restr0.102
r_nbtor_other0.085
r_symmetry_vdw_refined0.083
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9260
Nucleic Acid Atoms
Solvent Atoms853
Heterogen Atoms95

Software

Software
Software NamePurpose
REFMACrefinement