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Structure of PH0203 protein from Pyrococcus horikoshii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.1 295 20% PEG 4000, 0.5M LI2SO4, pH 8.1, microbatch, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.1 41.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.23 α = 90 b = 85.319 β = 97.16 c = 82.598 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V 2006-10-12 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V 2006-04-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.0 SPring-8 BL26B1 2 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.979103, 0.9794, 1.0 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.94 50 98 0.046 12.9 6.6 47216 46653 26.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.94 2.01 98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.94 20 47216 46653 2494 98.14 0.21 0.21 0.2153 0.25 0.2224 RANDOM 29.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.9 2.5 0.76 1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.153 r_dihedral_angle_3_deg 15.421 r_dihedral_angle_4_deg 10.95 r_dihedral_angle_1_deg 5.797 r_scangle_it 2.701 r_scbond_it 1.952 r_angle_refined_deg 1.358 r_mcangle_it 1.291 r_mcbond_it 1.148 r_angle_other_deg 0.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.153 r_dihedral_angle_3_deg 15.421 r_dihedral_angle_4_deg 10.95 r_dihedral_angle_1_deg 5.797 r_scangle_it 2.701 r_scbond_it 1.952 r_angle_refined_deg 1.358 r_mcangle_it 1.291 r_mcbond_it 1.148 r_angle_other_deg 0.846 r_symmetry_vdw_other 0.221 r_nbd_refined 0.213 r_nbd_other 0.195 r_symmetry_hbond_refined 0.191 r_nbtor_refined 0.178 r_symmetry_vdw_refined 0.175 r_mcbond_other 0.172 r_xyhbond_nbd_refined 0.152 r_nbtor_other 0.086 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5754 Nucleic Acid Atoms Solvent Atoms 375 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing