X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH8.129520% PEG 4000, 0.5M LI2SO4, pH 8.1, microbatch, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.141.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.23α = 90
b = 85.319β = 97.16
c = 82.598γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS V2006-10-12MSINGLE WAVELENGTH
21x-ray100IMAGE PLATERIGAKU RAXIS V2006-04-16MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL26B11.0SPring-8BL26B1
2SYNCHROTRONSPRING-8 BEAMLINE BL26B10.979103, 0.9794, 1.0SPring-8BL26B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.9450980.04612.96.6472164665326.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.942.0198

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.94204721646653249498.140.210.210.25RANDOM29.143
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.92.50.761.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.153
r_dihedral_angle_3_deg15.421
r_dihedral_angle_4_deg10.95
r_dihedral_angle_1_deg5.797
r_scangle_it2.701
r_scbond_it1.952
r_angle_refined_deg1.358
r_mcangle_it1.291
r_mcbond_it1.148
r_angle_other_deg0.846
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.153
r_dihedral_angle_3_deg15.421
r_dihedral_angle_4_deg10.95
r_dihedral_angle_1_deg5.797
r_scangle_it2.701
r_scbond_it1.952
r_angle_refined_deg1.358
r_mcangle_it1.291
r_mcbond_it1.148
r_angle_other_deg0.846
r_symmetry_vdw_other0.221
r_nbd_refined0.213
r_nbd_other0.195
r_symmetry_hbond_refined0.191
r_nbtor_refined0.178
r_symmetry_vdw_refined0.175
r_mcbond_other0.172
r_xyhbond_nbd_refined0.152
r_nbtor_other0.086
r_chiral_restr0.077
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5754
Nucleic Acid Atoms
Solvent Atoms375
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing