2IHD

Crystal structure of Human Regulator of G-protein signaling 8, RGS8


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.20M NaI; 20.0% PEG 3350; 10.0% Ethylene Glycol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2846.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.967α = 90
b = 65.967β = 90
c = 76.377γ = 90
Symmetry
Space GroupI 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2006-08-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.978SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75095.71720617199
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7699.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTSwissmodel based on pdb entry 2BT21.727.5163201632087895.710.177070.177070.175240.21119RANDOM12.144
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.20.2-0.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.115
r_dihedral_angle_4_deg21.025
r_dihedral_angle_3_deg11.283
r_scangle_it8.632
r_scbond_it6.384
r_dihedral_angle_1_deg4.739
r_mcangle_it4.135
r_mcbond_it3.024
r_mcbond_other1.192
r_angle_refined_deg1.141
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.115
r_dihedral_angle_4_deg21.025
r_dihedral_angle_3_deg11.283
r_scangle_it8.632
r_scbond_it6.384
r_dihedral_angle_1_deg4.739
r_mcangle_it4.135
r_mcbond_it3.024
r_mcbond_other1.192
r_angle_refined_deg1.141
r_angle_other_deg0.901
r_symmetry_vdw_other0.294
r_nbd_refined0.213
r_symmetry_hbond_refined0.192
r_xyhbond_nbd_refined0.188
r_nbtor_refined0.181
r_nbd_other0.175
r_symmetry_vdw_refined0.135
r_nbtor_other0.082
r_chiral_restr0.067
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1043
Nucleic Acid Atoms
Solvent Atoms170
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing