2IEL

CRYSTAL STRUCTURE OF TT0030 from Thermus Thermophilus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH UNDER OIL6.9291MODIFIED MICROBATCH USING 1.0 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE (28.3 mg/ml) AND SOLUTION CONTAING 10% GLYCEROL, 1.26M TR-ISODIUM CITRATE DIHYDRATE, 0.09M HEPES pH 7.5, Temperature 291K., pH 6.9, MICROBATCH UNDER OIL
Crystal Properties
Matthews coefficientSolvent content
2.1542.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.584α = 90
b = 89.584β = 90
c = 66.685γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDROSENBAUM2006-08-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID0.979APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65071.80.04557.112.2303852
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6930.60.282.772.61291

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.618.59282112822116661000.267940.267940.256640.2791RANDOM25.844
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.594
r_dihedral_angle_4_deg14.221
r_dihedral_angle_3_deg13.264
r_dihedral_angle_1_deg4.67
r_scangle_it2.441
r_scbond_it1.556
r_angle_refined_deg1.156
r_mcangle_it1.085
r_mcbond_it0.649
r_nbtor_refined0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.594
r_dihedral_angle_4_deg14.221
r_dihedral_angle_3_deg13.264
r_dihedral_angle_1_deg4.67
r_scangle_it2.441
r_scbond_it1.556
r_angle_refined_deg1.156
r_mcangle_it1.085
r_mcbond_it0.649
r_nbtor_refined0.305
r_symmetry_vdw_refined0.185
r_nbd_refined0.183
r_symmetry_hbond_refined0.181
r_xyhbond_nbd_refined0.121
r_chiral_restr0.067
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1995
Nucleic Acid Atoms
Solvent Atoms173
Heterogen Atoms

Software

Software
Software NamePurpose
Sca2Structuremodel building
REFMACrefinement
SERGUIdata collection
HKL-2000data reduction
SCALEPACKdata scaling
SCA2STRUCTUREphasing