2I5O

Solution Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Y-Polymerase Eta


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY2 mM Pol Eta UBZ; U-15N; 25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT100 mM KCl7ambient298
23D_13C-separated_NOESY2 mM Pol Eta UBZ; U-15N, 13C; 25 mM phosphate, 100 mM KCl, 100% D20, 2 mM DTT25 mM phosphate, 100 mM KCl, 100% D20, 2 mM DTT100 mM KCl7ambient298
3triple resonance experiments2 mM Pol Eta UBZ; U-15N, 13C; 25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT100 mM KCl7ambient298
413C HSQC2 mM Pol Eta UBZ; 10%-13C; 25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT100 mM KCl7ambient298
5HCCH-TOCSY2 mM Pol Eta UBZ; U-15N, 13C; 25 mM phosphate, 100 mM KCl, 100% D20, 2 mM DTT25 mM phosphate, 100 mM KCl, 100% D20, 2 mM DTT100 mM KCl7ambient298
6RDC experiments2 mM Pol Eta UBZ; U-15N, 13C; 25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT25 mM phosphate, 100 mM KCl, 95% H20, 5% D20, 2 mM DTT100 mM KCl7ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA800
NMR Refinement
MethodDetailsSoftware
Structure originally calculated by torsion angle dynamics and refined by water refinement.CYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with acceptable covalent geometry
Conformers Calculated Total Number30
Conformers Submitted Total Number15
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA2.1Guentert
2refinementXPLOR-NIH2.9.7Schwieters
3processingNMRPipe2.3Delaglio
4data analysisXEASY/CARA1.5.1Bartels