X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529615% PEG3000, 0.2M sodium chloride, 0.1M Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
2.4950.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.151α = 91
b = 98.105β = 112.56
c = 97.783γ = 111.77
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210Double Crystal Si(111)2005-03-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.116ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.3591.2996.90.0598.22.24177340483103
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.353.5496.90.4251.72.25873

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1S1G (For Kv4.3 T1 domain), PDB entry 1S6C (For KChIP1)3.3591.293859438594203896.920.238070.236510.26811RANDOM124.874
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
8.03-0.813.49-4.310.73-1.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.977
r_dihedral_angle_3_deg20.652
r_dihedral_angle_4_deg19.737
r_dihedral_angle_1_deg6.698
r_scangle_it1.924
r_angle_refined_deg1.415
r_scbond_it1.076
r_mcangle_it0.705
r_symmetry_hbond_refined0.427
r_symmetry_vdw_refined0.372
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.977
r_dihedral_angle_3_deg20.652
r_dihedral_angle_4_deg19.737
r_dihedral_angle_1_deg6.698
r_scangle_it1.924
r_angle_refined_deg1.415
r_scbond_it1.076
r_mcangle_it0.705
r_symmetry_hbond_refined0.427
r_symmetry_vdw_refined0.372
r_mcbond_it0.347
r_nbtor_refined0.317
r_nbd_refined0.252
r_metal_ion_refined0.21
r_xyhbond_nbd_refined0.158
r_chiral_restr0.101
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18942
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing