2HF5
The structure and function of a novel two-site calcium-binding fragment of calmodulin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 1H-15N-1H NOESY-HSQC | 0.5mM CaM2/3 U-15N,13C; 20 mM Tris d11, 50 mM KCl, 10 mM CaCl2, 90% H2O, and 10% D2O | 90% H2O/10% D2O | 50 mM | 7.4 | ambient | 298 | |
2 | simultaneous 1H-13C/15N-1H NOESY-HSQC | 0.5mM CaM2/3 U-15N,13C; 20 mM Tris d11, 50 mM KCl, 10 mM CaCl2, 90% H2O, and 10% D2O | 90% H2O/10% D2O | 50 mM | 7.4 | ambient | 298 | |
3 | aromatic 1H-13C-1H NOESY-HSQC | 0.5mM CaM2/3 U-15N,13C; 20 mM Tris d11, 50 mM KCl, 10 mM CaCl2, 90% H2O, and 10% D2O | 90% H2O/10% D2O | 50 mM | 7.4 | ambient | 298 | |
4 | methyl 1H-13C/15N-1H NOESY-HSQC | 0.5mM CaM2/3 U-15N,13C; 20 mM Tris d11, 50 mM KCl, 10 mM CaCl2, 90% H2O, and 10% D2O | 90% H2O/10% D2O | 50 mM | 7.4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
Restrained molecular dynamics, simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.1 | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN |
2 | structure solution | ARIA | 1.2 | Linge, Habeck et al. 2003 |
3 | processing | Felix | 2000 | Accelrys, Inc. |
4 | processing | NMRPipe | 2006 | Delaglio, Grzesiek et al. 1995 |
5 | data analysis | Sparky | 3.111 | Goddard and Kneeler 1999 |
6 | refinement | ARIA | 1.2 | Linge, Habeck et al. 2003 |
7 | refinement | CNS | 1.1 | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN |