2GUF

In meso crystal structure of the cobalamin transporter, BtuB


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.6253.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.61α = 90
b = 80.877β = 90
c = 118.681γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE F10.9124CHESSF1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9598.70.0795.451400
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.952.0294.30.4193.644.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9540.4448447259298.70.190550.190550.188710.22456RANDOM36.712
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.69-2.02-2.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.737
r_dihedral_angle_4_deg18.135
r_dihedral_angle_3_deg17.17
r_dihedral_angle_1_deg7.032
r_scangle_it4.449
r_scbond_it3.025
r_angle_refined_deg2.012
r_mcangle_it1.968
r_mcbond_it1.221
r_nbtor_refined0.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.737
r_dihedral_angle_4_deg18.135
r_dihedral_angle_3_deg17.17
r_dihedral_angle_1_deg7.032
r_scangle_it4.449
r_scbond_it3.025
r_angle_refined_deg2.012
r_mcangle_it1.968
r_mcbond_it1.221
r_nbtor_refined0.323
r_symmetry_vdw_refined0.246
r_nbd_refined0.222
r_xyhbond_nbd_refined0.175
r_symmetry_hbond_refined0.152
r_chiral_restr0.137
r_bond_refined_d0.019
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4385
Nucleic Acid Atoms
Solvent Atoms297
Heterogen Atoms299

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
MOLREPphasing