2FV4

NMR solution structure of the yeast kinetochore Spc24/Spc25 globular domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1TROSY versions of HNCA, HNCACB and HNCO; 3D 15N-TOCSY-HSQC.1.5 mM spc25G U-15N,13C,85%-2H, 1.5 mM spc24G natural abundance isotopes, 95% H2O, 5% D2O50 mM Phosphate buffer Na, pH 7.0, 1 mM azide, 95% H2O, 5% D2O.50 mM sodium phosphate buffer7.0ambient303
2TROSY versions of HNCA, HNCACB and HNCO; 3D 15N-TOCSY-HSQC.1.5 mM spc25G natural abundance isotopes, 1.5 mM spc24G U-15N,13C,85%-2H, 95% H2O, 5% D2O50 mM Phosphate buffer Na, pH 7.0, 1 mM azide, 95% H2O, 5% D2O.50 mM sodium phosphate buffer7.0ambient303
33D 15N-NOESY, 3D 13C-NOESY, and 3D 15N-edited 13C-filtered NOESY; 2D spin echo difference experiments for measuring three-bond J(C'C) and J(NC); standard HNCO-based 3D experiments for measuring one-bond J(NH) and J(C'CA).1.5 mM spc25G U-15N,13C, 1.5 mM spc24G natural abundance isotopes, 95% H2O, 5% D2O50 mM Phosphate buffer Na, pH 7.0, 1 mM azide, 95% H2O, 5% D2O.50 mM sodium phosphate buffer7.0ambient303
43D 15N-NOESY, 3D 13C-NOESY, and 3D 15N-edited 13C-filtered NOESY; 2D spin echo difference experiments for measuring three-bond J(C'C), J(NC) and J(CC); standard HNCO-based 3D experiments for measuring one-bond J(NH).1.5 mM spc25G natural abundance isotopes, 1.5 mM spc24G U-15N,13C, 95% H2O, 5% D2O50 mM Phosphate buffer Na, pH 7.0, 1 mM azide, 95% H2O, 5% D2O.50 mM sodium phosphate buffer7.0ambient303
5Standard HNCO-based 3D experiments for measuring residual one-bond D(NH) and D(C'CA).1.5 mM spc25G U-15N,13C, 85%-2H, 1.5 mM spc24G natural abundance isotopes, 50 mg/mL Pf1 phage, 95% H2O, 5% D2O50 mM Phosphate buffer Na, pH 7.0, 1 mM azide, 95% H2O, 5% D2O.50 mM sodium phosphate buffer7.0ambient303
6Standard HNCO-based 3D experiments for measuring residual one-bond D(NH).1.5 mM spc25G natural abundance isotopes, 1.5 mM spc24G U-15N,13C, 50 mg/mL Pf1 phage, 95% H2O, 5% D2O50 mM Phosphate buffer Na, pH 7.0, 1 mM azide, 95% H2O, 5% D2O.50 mM sodium phosphate buffer7.0ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number30
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe1.0Frank Delaglio
2data analysisCARA1.2Rochus Keller
3refinementXplor-NIH2.11Charles Schwieters