2FPX

Crystal Structure of the N-terminal Domain of E.coli HisB- Sulfate complex.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.528025%(w/v) PEG 3350, 0.2M MgSO4, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 280K
Crystal Properties
Matthews coefficientSolvent content
2.5351.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.605α = 90
b = 132.778β = 90
c = 107.162γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2005-08-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X8C1.1NSLSX8C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85097.10.06712.34.43495934959
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8682.60.3432.92.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTPDB Entry 2FPR1.8503495933235172497.480.1790.179360.177580.21284RANDOM17.796
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.310.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.888
r_dihedral_angle_4_deg16.598
r_dihedral_angle_3_deg12.15
r_dihedral_angle_1_deg6.06
r_scangle_it2.766
r_scbond_it1.76
r_angle_refined_deg1.213
r_mcangle_it1.059
r_mcbond_it0.665
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.888
r_dihedral_angle_4_deg16.598
r_dihedral_angle_3_deg12.15
r_dihedral_angle_1_deg6.06
r_scangle_it2.766
r_scbond_it1.76
r_angle_refined_deg1.213
r_mcangle_it1.059
r_mcbond_it0.665
r_nbtor_refined0.308
r_nbd_refined0.186
r_symmetry_hbond_refined0.141
r_xyhbond_nbd_refined0.13
r_symmetry_vdw_refined0.119
r_chiral_restr0.09
r_metal_ion_refined0.015
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2533
Nucleic Acid Atoms
Solvent Atoms513
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling