2FPS

Crystal structure of the N-terminal domain of E.coli HisB- Apo Ca model.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION6.529330% (w/v) PEG monomethyl ether 550, 0.05M CaCl2, 0.1M Bis-Tris., pH 6.5, EVAPORATION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4148.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.748α = 90
b = 131.325β = 90
c = 104.898γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4Mirrors2005-06-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X8C1.7NSLSX8C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25095.20.02939.83.41794217045
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2869.40.04919.62.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTPDB Entry 2FPR2.250179421704589794.810.1730.173440.16970.24399RANDOM23.493
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.78-0.991.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.326
r_dihedral_angle_4_deg20.164
r_dihedral_angle_3_deg13.379
r_dihedral_angle_1_deg6.607
r_scangle_it3.567
r_scbond_it2.303
r_angle_refined_deg1.533
r_mcangle_it1.416
r_mcbond_it0.826
r_nbtor_refined0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.326
r_dihedral_angle_4_deg20.164
r_dihedral_angle_3_deg13.379
r_dihedral_angle_1_deg6.607
r_scangle_it3.567
r_scbond_it2.303
r_angle_refined_deg1.533
r_mcangle_it1.416
r_mcbond_it0.826
r_nbtor_refined0.312
r_symmetry_hbond_refined0.273
r_nbd_refined0.205
r_symmetry_vdw_refined0.198
r_xyhbond_nbd_refined0.161
r_metal_ion_refined0.12
r_chiral_restr0.11
r_bond_refined_d0.015
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2568
Nucleic Acid Atoms
Solvent Atoms315
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling