2FKG

The Crystal Structure of Engineered OspA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529330% PEG1000 2% PEG400 0.1M HEPES 0.2M NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.550.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.447α = 90
b = 76.894β = 120
c = 51.941γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-06-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.00APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45099.60.04623.13.11345013450
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.491000.3433.263.11339

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.420132541259366199.550.22040.22040.218560.25535RANDOM58.776
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.951.642.941.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.381
r_dihedral_angle_3_deg21.654
r_dihedral_angle_4_deg20.486
r_dihedral_angle_1_deg6.148
r_scangle_it3.016
r_scbond_it2.004
r_angle_refined_deg1.499
r_mcbond_it1.393
r_mcangle_it1.272
r_angle_other_deg0.834
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.381
r_dihedral_angle_3_deg21.654
r_dihedral_angle_4_deg20.486
r_dihedral_angle_1_deg6.148
r_scangle_it3.016
r_scbond_it2.004
r_angle_refined_deg1.499
r_mcbond_it1.393
r_mcangle_it1.272
r_angle_other_deg0.834
r_symmetry_vdw_refined0.225
r_nbd_refined0.214
r_nbd_other0.211
r_symmetry_hbond_refined0.196
r_symmetry_vdw_other0.189
r_nbtor_refined0.166
r_xyhbond_nbd_refined0.157
r_mcbond_other0.121
r_chiral_restr0.091
r_nbtor_other0.087
r_xyhbond_nbd_other0.076
r_bond_refined_d0.014
r_bond_other_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2408
Nucleic Acid Atoms
Solvent Atoms69
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing