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The Crystal Structure of Engineered OspA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 30% PEG1000
2% PEG400
0.1M HEPES
0.2M NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.447 α = 90 b = 76.894 β = 120 c = 51.941 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.6 0.046 23.1 3.1 13450 13450
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.343 3.26 3.1 1339
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 20 13254 12593 661 99.55 0.2204 0.2204 0.21856 0.2204 0.25535 0.2536 RANDOM 58.776
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.95 1.64 2.94 1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.381 r_dihedral_angle_3_deg 21.654 r_dihedral_angle_4_deg 20.486 r_dihedral_angle_1_deg 6.148 r_scangle_it 3.016 r_scbond_it 2.004 r_angle_refined_deg 1.499 r_mcbond_it 1.393 r_mcangle_it 1.272 r_angle_other_deg 0.834
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.381 r_dihedral_angle_3_deg 21.654 r_dihedral_angle_4_deg 20.486 r_dihedral_angle_1_deg 6.148 r_scangle_it 3.016 r_scbond_it 2.004 r_angle_refined_deg 1.499 r_mcbond_it 1.393 r_mcangle_it 1.272 r_angle_other_deg 0.834 r_symmetry_vdw_refined 0.225 r_nbd_refined 0.214 r_nbd_other 0.211 r_symmetry_hbond_refined 0.196 r_symmetry_vdw_other 0.189 r_nbtor_refined 0.166 r_xyhbond_nbd_refined 0.157 r_mcbond_other 0.121 r_chiral_restr 0.091 r_nbtor_other 0.087 r_xyhbond_nbd_other 0.076 r_bond_refined_d 0.014 r_bond_other_d 0.005 r_gen_planes_refined 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2408 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing