X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52980.05M (NH4)2SO4, 0.1M Tris pH8.5, 25% P 5K MME, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3246.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.261α = 90
b = 96.617β = 90
c = 140.62γ = 90
Symmetry
Space GroupP 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirrors2005-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9798APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.19799.610.06833.88.735740356012235
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1696.720.4243.87.52714

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.196.673574035601189099.610.199020.196650.24264RANDOM34.994
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.45-0.320.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.561
r_dihedral_angle_3_deg16.758
r_dihedral_angle_4_deg16.219
r_dihedral_angle_1_deg6.604
r_scangle_it2.128
r_scbond_it1.467
r_angle_refined_deg1.407
r_mcangle_it1.051
r_mcbond_it0.931
r_angle_other_deg0.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.561
r_dihedral_angle_3_deg16.758
r_dihedral_angle_4_deg16.219
r_dihedral_angle_1_deg6.604
r_scangle_it2.128
r_scbond_it1.467
r_angle_refined_deg1.407
r_mcangle_it1.051
r_mcbond_it0.931
r_angle_other_deg0.88
r_symmetry_vdw_other0.24
r_symmetry_vdw_refined0.235
r_nbd_refined0.2
r_nbd_other0.189
r_xyhbond_nbd_refined0.188
r_symmetry_hbond_refined0.183
r_nbtor_refined0.171
r_mcbond_other0.125
r_nbtor_other0.086
r_chiral_restr0.083
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4364
Nucleic Acid Atoms
Solvent Atoms369
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-2000data scaling