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Ternary complex of SET7/9 bound to AdoHcy and a TAF10 peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O9S PDB ENTRY 1O9S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 1.89-2.04 M (NH4)2SO4, 0.1 M Bis TRIS pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 3.19 61.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.38 α = 90 b = 83.38 β = 90 c = 95.52 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2005-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.96863 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 29.14 100 0.06 17 11.26 94528 94528 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 100 0.505 3.9 9.32 9356
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1O9S 1.3 29.14 3 94463 89732 4731 99.9 0.15008 0.15008 0.1488 0.146 0.17412 0.1714 RANDOM 24.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.01 -0.03 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.293 r_sphericity_free 11.312 r_dihedral_angle_3_deg 10.799 r_dihedral_angle_4_deg 8.646 r_sphericity_bonded 8.445 r_dihedral_angle_1_deg 6.165 r_scangle_it 6.06 r_scbond_it 4.614 r_mcangle_it 3.613 r_rigid_bond_restr 2.815
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.293 r_sphericity_free 11.312 r_dihedral_angle_3_deg 10.799 r_dihedral_angle_4_deg 8.646 r_sphericity_bonded 8.445 r_dihedral_angle_1_deg 6.165 r_scangle_it 6.06 r_scbond_it 4.614 r_mcangle_it 3.613 r_rigid_bond_restr 2.815 r_mcbond_it 2.738 r_angle_refined_deg 2.038 r_nbtor_refined 0.315 r_symmetry_hbond_refined 0.279 r_symmetry_vdw_refined 0.27 r_xyhbond_nbd_refined 0.26 r_nbd_refined 0.231 r_chiral_restr 0.169 r_bond_refined_d 0.023 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2000 Nucleic Acid Atoms Solvent Atoms 472 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling MOLREP phasing