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Glycogen-Binding Domain Of The Amp-Activated Protein Kinase beta2 Subunit
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z0M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 27% MPD, 0.1 M Hepes, pH 7.5, 0.2 M Ammonium Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.55 51.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.723 α = 90 b = 69.723 β = 90 c = 118.491 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ VARIMAX 2005-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.75 99.6 0.04 59.8 9.1 7696 7696 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 97.1 0.547 2.8 6 739
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Z0M 2 19.75 7696 7330 365 99.62 0.23923 0.23659 0.2602 0.29608 0.3077 RANDOM 54.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -0.53 -1.06 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.891 r_dihedral_angle_4_deg 21.029 r_dihedral_angle_3_deg 18.43 r_dihedral_angle_1_deg 6.761 r_scangle_it 4.755 r_scbond_it 3.483 r_mcangle_it 3.025 r_mcbond_it 2.168 r_angle_refined_deg 1.603 r_symmetry_hbond_refined 0.376
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.891 r_dihedral_angle_4_deg 21.029 r_dihedral_angle_3_deg 18.43 r_dihedral_angle_1_deg 6.761 r_scangle_it 4.755 r_scbond_it 3.483 r_mcangle_it 3.025 r_mcbond_it 2.168 r_angle_refined_deg 1.603 r_symmetry_hbond_refined 0.376 r_nbtor_refined 0.318 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.237 r_xyhbond_nbd_refined 0.197 r_chiral_restr 0.107 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 721 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing