2F15

Glycogen-Binding Domain Of The Amp-Activated Protein Kinase beta2 Subunit


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529827% MPD, 0.1 M Hepes, pH 7.5, 0.2 M Ammonium Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.5551.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.723α = 90
b = 69.723β = 90
c = 118.491γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++VARIMAX2005-09-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1219.7599.60.0459.89.176967696-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.0797.10.5472.86739

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1Z0M219.757696733036599.620.239230.236590.29608RANDOM54.66
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.06-0.53-1.061.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.891
r_dihedral_angle_4_deg21.029
r_dihedral_angle_3_deg18.43
r_dihedral_angle_1_deg6.761
r_scangle_it4.755
r_scbond_it3.483
r_mcangle_it3.025
r_mcbond_it2.168
r_angle_refined_deg1.603
r_symmetry_hbond_refined0.376
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.891
r_dihedral_angle_4_deg21.029
r_dihedral_angle_3_deg18.43
r_dihedral_angle_1_deg6.761
r_scangle_it4.755
r_scbond_it3.483
r_mcangle_it3.025
r_mcbond_it2.168
r_angle_refined_deg1.603
r_symmetry_hbond_refined0.376
r_nbtor_refined0.318
r_symmetry_vdw_refined0.258
r_nbd_refined0.237
r_xyhbond_nbd_refined0.197
r_chiral_restr0.107
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms721
Nucleic Acid Atoms
Solvent Atoms33
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing