☰ Navigation Tabs
Crystal structure of a putative fe(iii) abc transporter (tm0189) from thermotoga maritima msb8 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 0.2M (NH4)2HPO4, 20.0% PEG-3350, No Buffer pH 7.9, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.6 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.82 α = 90 b = 109.82 β = 90 c = 122.67 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2005-08-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97960, 0.95372 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 92.8 0.103 6.78 5.65 92056
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 80.4 80.4 0.725 1.51
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 30 87413 4608 99.92 0.165 0.16514 0.163 0.207 0.2312 RANDOM 20.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.04 0.07 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.392 r_dihedral_angle_4_deg 19.497 r_dihedral_angle_3_deg 12.943 r_scangle_it 6.228 r_dihedral_angle_1_deg 5.733 r_scbond_it 4.648 r_mcangle_it 2.515 r_mcbond_it 1.966 r_angle_refined_deg 1.571 r_angle_other_deg 1.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.392 r_dihedral_angle_4_deg 19.497 r_dihedral_angle_3_deg 12.943 r_scangle_it 6.228 r_dihedral_angle_1_deg 5.733 r_scbond_it 4.648 r_mcangle_it 2.515 r_mcbond_it 1.966 r_angle_refined_deg 1.571 r_angle_other_deg 1.074 r_mcbond_other 0.537 r_symmetry_vdw_other 0.334 r_symmetry_hbond_refined 0.285 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.219 r_nbd_other 0.196 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.104 r_nbtor_other 0.084 r_xyhbond_nbd_other 0.048 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5411 Nucleic Acid Atoms Solvent Atoms 778 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SOLVE phasing