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Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 1.4mM protein U-15N, 13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT;
0.02% NaN3; 10% D2O, 90% H2O 90% H2O/10% D2O 120mM 7.0 ambient 298 2 3D_13C-separated_NOESY 1.4mM protein U-15N, 13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT;
0.02% NaN3; 10% D2O, 90% H2O 90% H2O/10% D2O 120mM 7.0 ambient 298 3 2D_15N_IPAP_HSQC 1.4mM protein U-15N, 13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT;
0.02% NaN3; 10% D2O, 90% H2O 90% H2O/10% D2O 120mM 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics XwinNMR
NMR Ensemble Information Conformer Selection Criteria target function, structures with the lowest energy, structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details Information from residual dipolar couplings was used in the structural calculation.
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 Bruker 2 processing NMRPipe 20030801 Delaglio, F. 3 data analysis NMRView 5.0.4 Johnson, B.A. 4 data analysis KUJIRA 0.965 Kobayashi, N. 5 structure solution CYANA 2.1 Guntert, P. 6 refinement CYANA 2.1 Guntert, P.