☰ Navigation Tabs
Crystal Structure of the Human GCSF-Receptor Signaling Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CD9 PDB ENTRY 1CD9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 293 0.2M ammonium phosphate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 5.17 76.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.777 α = 90 b = 134.777 β = 90 c = 105.468 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 91 0.058 20.3 5.9 25214 43.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 78 0.355 1.9 2.2 2129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR and MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CD9 2.8 20 23837 23837 1264 91.21 0.25311 0.25311 0.25145 0.2418 0.28445 0.2777 RANDOM 68.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.32 1.66 3.32 -4.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.748 r_mcangle_it 3.667 r_scangle_it 3.209 r_angle_refined_deg 2.975 r_mcbond_it 2.089 r_scbond_it 1.878 r_angle_other_deg 1.182 r_symmetry_vdw_refined 0.35 r_symmetry_hbond_refined 0.347 r_nbd_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.748 r_mcangle_it 3.667 r_scangle_it 3.209 r_angle_refined_deg 2.975 r_mcbond_it 2.089 r_scbond_it 1.878 r_angle_other_deg 1.182 r_symmetry_vdw_refined 0.35 r_symmetry_hbond_refined 0.347 r_nbd_refined 0.314 r_symmetry_vdw_other 0.308 r_nbd_other 0.296 r_xyhbond_nbd_refined 0.241 r_chiral_restr 0.143 r_nbtor_other 0.126 r_bond_refined_d 0.037 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3605 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MLPHARE phasing SHARP phasing PHASER phasing