2D9Q
Crystal Structure of the Human GCSF-Receptor Signaling Complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2d9qa_ | All alpha proteins | 4-helical cytokines | 4-helical cytokines | Long-chain cytokines | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2d9qb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C2 set domains | Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2d9qb2 | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | Fibronectin type III | Granulocyte colony-stimulating factor (GC-SF) receptor | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | 4-helical cytokines | 8037058 | 3001717 | SCOP2B (2022-06-29) |
B | SCOP2 Family | C2 set domains | 8054750 | 4007529 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Fibronectin type III | 8055140 | 4007555 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Fibronectin type III | 8055528 | 4007555 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Immunoglobulin (Ig) domain-like | 8054751 | 3000071 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Fibronectin type III | 8055141 | 3002063 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Fibronectin type III | 8055529 | 3002063 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16647 | e2d9qA1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: PF16647 | ECOD (1.6) |
B | F_UNCLASSIFIED | e2d9qB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF06328 | e2d9qB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06328 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1250.10 | Mainly Alpha | Up-down Bundle | Growth Hormone | Chain: A | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16647 | Granulocyte colony-stimulating factor (GCSF) | Granulocyte colony-stimulating factor | GCSF is a family of higher eukaryotic granulocyte colony-stimulating factor proteins. Granulocyte colony-stimulating factors are cytokines that are involved in haematopoeisis. They control the production, differentiation and function of white blood ... | Domain | |
PF06328 | Ig-like C2-type domain (Lep_receptor_Ig) | Ig-like C2-type domain | This domain is a ligand-binding immunoglobulin-like domain [1]. The two cysteine residues form a disulphide bridge. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR030473 | Interleukin-6/GCSF/MGF, conserved site | Conserved Site | |
IPR009079 | Four-helical cytokine-like, core | Homologous Superfamily | |
IPR040117 | GCSF/MGF | Family | |
IPR030474 | Interleukin-6/GCSF/MGF | Family | |
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR003961 | Fibronectin type III | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR003529 | Long hematopoietin receptor, Gp130 family 2, conserved site | Conserved Site | |
IPR036116 | Fibronectin type III superfamily | Homologous Superfamily | |
IPR010457 | Immunoglobulin C2-set-like, ligand-binding | Domain |