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Crystal structure of the MAM-Ig module of receptor protein tyrosine phosphatase mu
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 295 0.1 M TRI-SODIUM CITRATE, PH 6.2 0.1 M AMMONIUM CHLORIDE 30% (W/V) PEG 4000
Crystal Properties Matthews coefficient Solvent content 3.13 60.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.856 α = 90 b = 97.737 β = 90 c = 134.357 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-11-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 99.3 0.14 12.7 10.5 10567 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.3 0.53 4.1 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.7 30 10473 534 100 0.225 0.222 0.256 0.275 0.3133 RANDOM 47.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.22 9.21 -4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.92 r_dihedral_angle_4_deg 18.982 r_dihedral_angle_3_deg 18.598 r_dihedral_angle_1_deg 7.24 r_scangle_it 2.858 r_scbond_it 1.623 r_angle_refined_deg 1.594 r_mcangle_it 0.967 r_mcbond_it 0.504 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.92 r_dihedral_angle_4_deg 18.982 r_dihedral_angle_3_deg 18.598 r_dihedral_angle_1_deg 7.24 r_scangle_it 2.858 r_scbond_it 1.623 r_angle_refined_deg 1.594 r_mcangle_it 0.967 r_mcbond_it 0.504 r_nbtor_refined 0.321 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.234 r_xyhbond_nbd_refined 0.166 r_symmetry_hbond_refined 0.102 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2037 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing SOLVE phasing RESOLVE phasing