2C40

CRYSTAL STRUCTURE OF INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FROM BACILLUS ANTHRACIS AT 2.2A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.522% PEG 3350, 0.2 M NACL, TRIS-HCL PH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.651.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.154α = 90
b = 78.154β = 90
c = 203.626γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2005-09-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.224.8199.90.0723.76.637372
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2899.90.63.026.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HOZ2.267.8835505186799.60.2070.2050.242RANDOM40.68
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.670.330.67-1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.696
r_dihedral_angle_3_deg18.91
r_dihedral_angle_4_deg17.149
r_dihedral_angle_1_deg6.83
r_scangle_it2.789
r_scbond_it1.941
r_angle_refined_deg1.781
r_mcangle_it1.068
r_angle_other_deg1.004
r_mcbond_it0.655
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.696
r_dihedral_angle_3_deg18.91
r_dihedral_angle_4_deg17.149
r_dihedral_angle_1_deg6.83
r_scangle_it2.789
r_scbond_it1.941
r_angle_refined_deg1.781
r_mcangle_it1.068
r_angle_other_deg1.004
r_mcbond_it0.655
r_symmetry_vdw_refined0.339
r_symmetry_vdw_other0.297
r_nbd_refined0.215
r_symmetry_hbond_refined0.209
r_xyhbond_nbd_refined0.202
r_nbd_other0.19
r_nbtor_refined0.179
r_chiral_restr0.12
r_nbtor_other0.095
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4691
Nucleic Acid Atoms
Solvent Atoms125
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing