☰ Navigation Tabs
Crystal structure of Hepatitis C virus polymerase in complex with an allosteric inhibitor (compound 1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CSJ PDB ENTRY 1CSJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.47 49.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.002 α = 90 b = 94.488 β = 90 c = 95.73 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 99.7 0.1 9 4.4 28007
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 99.5 0.46 1.3 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CSJ 2.3 95.35 26513 1405 99.3 0.187 0.184 0.245 0.2383 RANDOM 25.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.12 -2.51 1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.77 r_scangle_it 3.731 r_scbond_it 2.183 r_mcangle_it 1.428 r_angle_refined_deg 1.382 r_angle_other_deg 1.136 r_mcbond_it 0.721 r_symmetry_vdw_refined 0.45 r_symmetry_vdw_other 0.297 r_nbd_other 0.253
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.77 r_scangle_it 3.731 r_scbond_it 2.183 r_mcangle_it 1.428 r_angle_refined_deg 1.382 r_angle_other_deg 1.136 r_mcbond_it 0.721 r_symmetry_vdw_refined 0.45 r_symmetry_vdw_other 0.297 r_nbd_other 0.253 r_symmetry_hbond_refined 0.229 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.193 r_nbtor_other 0.107 r_chiral_restr 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3968 Nucleic Acid Atoms Solvent Atoms 445 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing