2B42

Crystal structure of the Triticum xylanse inhibitor-I in complex with bacillus subtilis xylanase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62770.22 M ammonium sulphate, 0.1 M sodium acetate buffer, 25 % (w/v) polyethylene glycol 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.651.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.89α = 90
b = 95.34β = 122.24
c = 69.31γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-11-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.529.3688.120136181661.410.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.52.6498

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.529.36181661816619681000.188140.188140.182650.23977RANDOM37.362
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.411.320.910.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.171
r_scangle_it2.473
r_scbond_it1.455
r_angle_refined_deg1.425
r_mcangle_it1.285
r_angle_other_deg0.808
r_mcbond_it0.693
r_symmetry_vdw_other0.269
r_symmetry_hbond_refined0.258
r_nbd_other0.242
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.171
r_scangle_it2.473
r_scbond_it1.455
r_angle_refined_deg1.425
r_mcangle_it1.285
r_angle_other_deg0.808
r_mcbond_it0.693
r_symmetry_vdw_other0.269
r_symmetry_hbond_refined0.258
r_nbd_other0.242
r_nbd_refined0.201
r_symmetry_vdw_refined0.149
r_xyhbond_nbd_refined0.143
r_chiral_restr0.083
r_nbtor_other0.083
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4047
Nucleic Acid Atoms
Solvent Atoms65
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling
CNSrefinement
MOSFLMdata reduction
CCP4data scaling
CNSphasing