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Crystal structure of the MDC1 brct repeat in complex with the histone tail of gamma-H2AX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 PEG 4000, NaCl, TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.437 α = 90 b = 75.609 β = 90 c = 114.849 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.97852 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 0.123 17.4 12.6 23006 23006
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.51 0.42 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.41 15 23323 21707 1177 98.64 0.1936 0.19058 0.197 0.2485 0.2013 RANDOM 27.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.99 -1.57 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.657 r_dihedral_angle_4_deg 21.289 r_dihedral_angle_3_deg 16.932 r_dihedral_angle_1_deg 5.826 r_scangle_it 3.695 r_scbond_it 2.41 r_mcangle_it 1.406 r_angle_refined_deg 1.309 r_mcbond_it 0.823 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.657 r_dihedral_angle_4_deg 21.289 r_dihedral_angle_3_deg 16.932 r_dihedral_angle_1_deg 5.826 r_scangle_it 3.695 r_scbond_it 2.41 r_mcangle_it 1.406 r_angle_refined_deg 1.309 r_mcbond_it 0.823 r_nbtor_refined 0.305 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.133 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3081 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing