X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62930.01M Cobaltous Chlorid hexahydrate, 0.1M Sodium Acetate trihydrate, 1M of 1,6 Hexnediol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.6766

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.907α = 90
b = 70.907β = 90
c = 170.681γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2003-12-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.933ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.665.5199.90.0932923029230
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6399.50.7220.0522.36.81403

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2ASC1.6402920229202148499.910.1290.1290.1270.17RANDOM19.481
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.720.72-1.44
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free31.966
r_dihedral_angle_2_deg27.993
r_scangle_it14.04
r_dihedral_angle_3_deg13.374
r_scbond_it12.471
r_dihedral_angle_4_deg11.804
r_sphericity_bonded9.444
r_mcangle_it6.994
r_mcbond_it6.774
r_dihedral_angle_1_deg6.342
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free31.966
r_dihedral_angle_2_deg27.993
r_scangle_it14.04
r_dihedral_angle_3_deg13.374
r_scbond_it12.471
r_dihedral_angle_4_deg11.804
r_sphericity_bonded9.444
r_mcangle_it6.994
r_mcbond_it6.774
r_dihedral_angle_1_deg6.342
r_rigid_bond_restr6.318
r_mcbond_other3.265
r_angle_refined_deg1.306
r_angle_other_deg0.953
r_symmetry_hbond_refined0.327
r_symmetry_vdw_other0.237
r_xyhbond_nbd_refined0.234
r_nbd_other0.2
r_nbd_refined0.197
r_nbtor_refined0.184
r_chiral_restr0.086
r_nbtor_other0.084
r_symmetry_vdw_refined0.071
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1016
Nucleic Acid Atoms
Solvent Atoms211
Heterogen Atoms17

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ProDCdata collection