2AMG

STRUCTURE OF HYDROLASE (GLYCOSIDASE)


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.856.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.6α = 90
b = 170.5β = 90
c = 46.7γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
121091.60.0664.1333971

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION21023339791.60.178
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor33.2
p_staggered_tor17.7
p_planar_tor2.4
p_scangle_it2.157
p_scbond_it1.334
p_mcangle_it1.305
p_mcbond_it0.731
p_multtor_nbd0.192
p_singtor_nbd0.178
p_xyhbond_nbd0.167
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor33.2
p_staggered_tor17.7
p_planar_tor2.4
p_scangle_it2.157
p_scbond_it1.334
p_mcangle_it1.305
p_mcbond_it0.731
p_multtor_nbd0.192
p_singtor_nbd0.178
p_xyhbond_nbd0.167
p_chiral_restr0.153
p_planar_d0.039
p_angle_d0.032
p_bond_d0.013
p_plane_restr0.012
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3459
Nucleic Acid Atoms
Solvent Atoms178
Heterogen Atoms2

Software

Software
Software NamePurpose
X-PLORmodel building
PROFFTrefinement
X-PLORrefinement
X-PLORphasing