X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP, NANODROP7.32770.2M KFormate, 20.9% PEG-3350, No Buffer, pH 7.3, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
2VAPOR DIFFUSION, SITTING DROP, NANODROP7.12730.2M NaF, 20.0% PEG-3350, No Buffer, pH 7.1, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 273K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.81α = 90
b = 108.81β = 90
c = 82.18γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315flat mirror2005-07-18MSINGLE WAVELENGTH
22x-ray100CCDMARMOSAIC 325 mm CCD2005-07-03MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-11.000001SSRLBL11-1
2SYNCHROTRONSSRL BEAMLINE BL9-20.91162, 0.97913, 0.97929SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.6747.1493.40.06512.936.664155
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.671.7381.481.40.7531.72

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.6747.1260915321399.970.1690.1670.191RANDOM24.674
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.45-0.73-1.452.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.219
r_dihedral_angle_4_deg18.796
r_dihedral_angle_3_deg12.829
r_dihedral_angle_1_deg6.468
r_scangle_it5.545
r_scbond_it3.918
r_mcangle_it3.592
r_mcbond_it2.502
r_angle_refined_deg1.597
r_mcbond_other1.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.219
r_dihedral_angle_4_deg18.796
r_dihedral_angle_3_deg12.829
r_dihedral_angle_1_deg6.468
r_scangle_it5.545
r_scbond_it3.918
r_mcangle_it3.592
r_mcbond_it2.502
r_angle_refined_deg1.597
r_mcbond_other1.19
r_angle_other_deg0.808
r_symmetry_vdw_other0.22
r_nbd_refined0.216
r_symmetry_hbond_refined0.19
r_nbd_other0.185
r_xyhbond_nbd_refined0.183
r_nbtor_refined0.179
r_symmetry_vdw_refined0.165
r_chiral_restr0.093
r_nbtor_other0.084
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2412
Nucleic Acid Atoms
Solvent Atoms401
Heterogen Atoms71

Software

Software
Software NamePurpose
REFMACrefinement
XSCALEdata processing
PDB_EXTRACTdata extraction
XDSdata reduction
XSCALEdata scaling
SHELXDphasing
autoSHARPphasing