2A2Y
NMR Structue of Sso10b2 from Sulfolobus solfataricus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1 mM Sso10b2, U-15N, U-13C, pH 4.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 4.8 | 1 atm | 303 | |
2 | 3D_13C-separated_NOESY | 1 mM Sso10b2, U-15N, U-13C, pH 4.8 | 99.996% D2O | 0 | 4.8 | 1 atm | 303 | |
3 | HNHA | 1 mM Sso10b2, U-15N, U-13C, pH 4.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 4.8 | 1 atm | 303 | |
4 | T1_T1rho_HSQC | 1 mM Sso10b2, U-15N, pH 4.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 4.8 | 1 atm | 303 | |
5 | 2D_1H-15N_NOE | 1 mM Sso10b2, U-15N, pH 4.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0 | 4.8 | 1 atm | 303 | |
6 | 12C-filtered_C13-edited_NOESY | hetero-labeled dimer consisting of 0.5 mM Sso10b2 U-15N, U-13C, 0.5 mM Sso10b2 unlabled pH 5.0 | 99.996% D2O | 0 | 4.8 | 1 atm | 303 | |
7 | IPAP_HSQC | 1 mM Sso10b2, U-15N, pH 4.8, 90% H2O, 10% D2O with alignment media consisting of 5% C12E5/hexanol (r=.87) | 90% H2O, 10%D2O with alignment media consisting of 5% C12E5/hexanol (r=.87) | 0 | 4.8 | 1 atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 800 |
2 | Varian | UNITYPLUS | 500 |
NMR Refinement | ||
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Method | Details | Software |
Simulated annealing using cartesian and torsion angle dynamics. | NOE assignments, distance restraint calibrations, and initial structures were made using ARIA 1.2. Final structure refinement was done using Xplor-NIH with the NOE derived distance restraints, 126 phi/psi dihedral angles, 48 HNHA coupling constants, 33 hydrogen bonds, 80 dipolar couplings, 57 T1/T2 relaxation ratios, and non-crystallographic dimer symmetry restraints (numbers are per monomer). Anisotropy tensors were refined simultaneously with the structure. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | 10 structures with the lowest total energy including restraint terms |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 11 |
Representative Model | 1 (model 1 is a restrained energy minimized average structure. models 2 through 11 are the 10 best ensemble structures.) |
Additional NMR Experimental Information | |
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Details | model 1 is an energy minimized average structure. models 2 through 11 are the 10 best ensemble structures. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian, Inc. |
2 | processing | NMRPipe | 2004 | F. Delaglio |
3 | data analysis | NMRView | 5.2.2 | B. Johnson |
4 | structure solution | ARIA | 1.2 | M. Nilges |
5 | data analysis | TENSOR2 | 2 | M. Blackledge |
6 | refinement | Xplor-NIH | 2.9.7 | G.M. Clore |