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Crystal structure of the novel two-domain type laccase from a metagenome
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2M Potassium chloride, 0.05M HEPES, pH7.5, 35% Pentaerythritol propoxylate (5/4 PO/OH), VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.669 α = 90 b = 100.945 β = 90 c = 124.106 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2008-10-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 35.01 98106
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 35.01 98106 5216 100 0.16054 0.15934 0.1659 0.18322 0.1889 RANDOM 11.177
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 0.99 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.053 r_dihedral_angle_4_deg 21.339 r_dihedral_angle_3_deg 11.559 r_dihedral_angle_1_deg 6.443 r_scangle_it 1.799 r_scbond_it 1.259 r_angle_refined_deg 1.145 r_angle_other_deg 0.786 r_mcangle_it 0.686 r_mcbond_it 0.611
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.053 r_dihedral_angle_4_deg 21.339 r_dihedral_angle_3_deg 11.559 r_dihedral_angle_1_deg 6.443 r_scangle_it 1.799 r_scbond_it 1.259 r_angle_refined_deg 1.145 r_angle_other_deg 0.786 r_mcangle_it 0.686 r_mcbond_it 0.611 r_nbd_other 0.191 r_nbd_refined 0.178 r_symmetry_vdw_other 0.177 r_nbtor_refined 0.176 r_symmetry_hbond_refined 0.102 r_metal_ion_refined 0.099 r_xyhbond_nbd_refined 0.094 r_symmetry_vdw_refined 0.092 r_mcbond_other 0.087 r_nbtor_other 0.081 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7503 Nucleic Acid Atoms Solvent Atoms 628 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHARP phasing