2ZUJ

Crystal Structure of Camphor-soaked Ferric Cytochrome P450cam Mutant(D297L)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.429811-14% PEG 8000, 250mM potassium chloride, 10mM DTE, 1mM d-camphor, 50mM Tris-HCl, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.754.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.758α = 90
b = 63.758β = 90
c = 248.353γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker DIP-60402008-06-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44XU0.7SPring-8BL44XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.633.3996.50.05713.54.76634322.37
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6698.90.3984.76638

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2ZAX1.633.396634362126332295.150.162510.160420.20275RANDOM23.287
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.843
r_dihedral_angle_3_deg13.833
r_dihedral_angle_4_deg11.141
r_sphericity_bonded5.99
r_dihedral_angle_1_deg5.457
r_scangle_it2.935
r_scbond_it1.977
r_angle_refined_deg1.525
r_mcangle_it1.246
r_mcbond_it0.715
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.843
r_dihedral_angle_3_deg13.833
r_dihedral_angle_4_deg11.141
r_sphericity_bonded5.99
r_dihedral_angle_1_deg5.457
r_scangle_it2.935
r_scbond_it1.977
r_angle_refined_deg1.525
r_mcangle_it1.246
r_mcbond_it0.715
r_nbtor_refined0.309
r_symmetry_vdw_refined0.247
r_nbd_refined0.244
r_symmetry_hbond_refined0.169
r_xyhbond_nbd_refined0.149
r_metal_ion_refined0.11
r_chiral_restr0.105
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3670
Nucleic Acid Atoms
Solvent Atoms831
Heterogen Atoms59

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing