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crystal structure of the eIF4A-PDCD4 complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 14% MPD, 0.1M Sodium Citrate, pH6.0, 100mM Ammonium acetate, 5mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.64 53.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.893 α = 90 b = 165.384 β = 90 c = 100.424 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD ADSC QUANTUM 315 2008-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.9 0.094 0.061 26.8 7.3 64680 64611
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.8 50 0.19 61093 3253 98.97 0.25003 0.24768 0.2485 0.29363 0.2566 RANDOM 88.554
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.31 3.55 -4.86
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 39.089 f_dihedral_angle_3_deg 23.197 f_dihedral_angle_4_deg 21.507 f_dihedral_angle_1_deg 7.979 f_scangle_it 4.19 f_scbond_it 2.645 f_mcangle_it 1.938 f_angle_refined_deg 1.446 f_mcbond_it 1.169 f_symmetry_vdw_refined 0.367
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 39.089 f_dihedral_angle_3_deg 23.197 f_dihedral_angle_4_deg 21.507 f_dihedral_angle_1_deg 7.979 f_scangle_it 4.19 f_scbond_it 2.645 f_mcangle_it 1.938 f_angle_refined_deg 1.446 f_mcbond_it 1.169 f_symmetry_vdw_refined 0.367 f_nbtor_refined 0.33 f_nbd_refined 0.278 f_symmetry_hbond_refined 0.236 f_xyhbond_nbd_refined 0.193 f_chiral_restr 0.106 f_bond_refined_d 0.013 f_gen_planes_refined 0.007 f_bond_other_d f_angle_other_deg f_gen_planes_other f_nbd_other f_nbtor_other f_xyhbond_nbd_other f_metal_ion_refined f_metal_ion_other f_symmetry_vdw_other f_symmetry_hbond_other f_symmetry_metal_ion_refined f_symmetry_metal_ion_other f_mcbond_other f_rigid_bond_restr f_sphericity_free f_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14933 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 12
Software Software Software Name Purpose PHENIX refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling SHELXS phasing