2ZSS

Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [300 min]


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1batch62932.4M Ammonium sulfate, 10mM TrisHCl, 100mM Sodium phosphate, pH 6.0, batch, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8734.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.371α = 90
b = 30.614β = 105.79
c = 63.809γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray140CCDMAR CCD 165 mm2008-02-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW14A0.827Photon FactoryAR-NW14A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.215083.50.0538.53.333117-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.211.2523.90.6511.4937

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1MBC1.2117.0233070164284.490.1610.1580.217RANDOM16.194
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.02-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.97
r_dihedral_angle_4_deg24.819
r_dihedral_angle_3_deg14.18
r_sphericity_free13.24
r_scangle_it7.719
r_sphericity_bonded7.102
r_scbond_it5.633
r_dihedral_angle_1_deg5.509
r_mcangle_it4.025
r_rigid_bond_restr3.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.97
r_dihedral_angle_4_deg24.819
r_dihedral_angle_3_deg14.18
r_sphericity_free13.24
r_scangle_it7.719
r_sphericity_bonded7.102
r_scbond_it5.633
r_dihedral_angle_1_deg5.509
r_mcangle_it4.025
r_rigid_bond_restr3.67
r_mcbond_it2.968
r_angle_refined_deg2.661
r_metal_ion_refined0.483
r_nbtor_refined0.33
r_nbd_refined0.309
r_symmetry_vdw_refined0.252
r_chiral_restr0.202
r_symmetry_hbond_refined0.169
r_xyhbond_nbd_refined0.146
r_bond_refined_d0.032
r_gen_planes_refined0.016
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1217
Nucleic Acid Atoms
Solvent Atoms146
Heterogen Atoms55

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling