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The Nature of the TRAP:Anti-TRAP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BX9 2BX9, 1QAW experimental model PDB 1QAW 2BX9, 1QAW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.1M succinate pH 7.0, 13-15% PEG 10000, 2% dioxane, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.07 59.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 197.134 α = 90 b = 197.135 β = 90 c = 56.658 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 90.7 0.056 0.053 3.1 19198 76.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.31 75.9 0.195 0.235 2.2 2.1 19198
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION PHASER THROUGHOUT 2BX9, 1QAW 3.2 20 18174 984 90.97 0.30461 0.30349 0.3023 0.3248 0.3242 RANDOM 84.761
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.1 -2.05 -4.1 6.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.81 r_dihedral_angle_3_deg 19.593 r_dihedral_angle_4_deg 16.356 r_dihedral_angle_1_deg 5.234 r_angle_refined_deg 1.124 r_scangle_it 1.007 r_scbond_it 0.581 r_mcangle_it 0.355 r_nbtor_refined 0.304 r_symmetry_hbond_refined 0.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.81 r_dihedral_angle_3_deg 19.593 r_dihedral_angle_4_deg 16.356 r_dihedral_angle_1_deg 5.234 r_angle_refined_deg 1.124 r_scangle_it 1.007 r_scbond_it 0.581 r_mcangle_it 0.355 r_nbtor_refined 0.304 r_symmetry_hbond_refined 0.227 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.218 r_mcbond_it 0.198 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5633 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling PHASER phasing