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Family 16 Carbohydrate Binding Module-2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZEW PDB ENTRY 2ZEW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 3.5M sodium formate pH7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.73 54.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.425 α = 90 b = 99.525 β = 90 c = 139.39 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 93.5 0.037 35.3 5.6 51462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 85.8 0.169 11.6 5.4 4669
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2ZEW 1.9 30 48583 2607 93.68 0.23459 0.2326 0.2349 0.27203 0.2727 RANDOM 31.141
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 -1.2 2.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.461 r_dihedral_angle_3_deg 14.169 r_dihedral_angle_1_deg 7.129 r_dihedral_angle_4_deg 3.277 r_scangle_it 2.089 r_scbond_it 1.485 r_angle_refined_deg 1.229 r_mcangle_it 0.913 r_mcbond_it 0.626 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.461 r_dihedral_angle_3_deg 14.169 r_dihedral_angle_1_deg 7.129 r_dihedral_angle_4_deg 3.277 r_scangle_it 2.089 r_scbond_it 1.485 r_angle_refined_deg 1.229 r_mcangle_it 0.913 r_mcbond_it 0.626 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.226 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.088 r_metal_ion_refined 0.043 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4409 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing