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Family 16 carbohydrate binding module
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZEW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 1.5M ammonium sulfate, 100mM MEX pH6.5, 10% dioxane, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.87 57.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.094 α = 90 b = 74.094 β = 90 c = 116.086 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98.9 0.039 41.3 5.7 19044
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.23 91.7 0.359 8.2 3.6 1746
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZEW 2.2 25 18027 973 98.88 0.17177 0.16968 0.1718 0.21231 0.215 RANDOM 51.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.34 0.68 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.013 r_dihedral_angle_3_deg 14.217 r_dihedral_angle_1_deg 7.169 r_scangle_it 1.867 r_angle_refined_deg 1.416 r_scbond_it 1.26 r_mcangle_it 0.837 r_mcbond_it 0.518 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.285
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.013 r_dihedral_angle_3_deg 14.217 r_dihedral_angle_1_deg 7.169 r_scangle_it 1.867 r_angle_refined_deg 1.416 r_scbond_it 1.26 r_mcangle_it 0.837 r_mcbond_it 0.518 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.285 r_symmetry_hbond_refined 0.208 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.099 r_metal_ion_refined 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2246 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing