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Family 16 carbohydrate binding module
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZEW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 298 30% PEG3350, 100mM Tris-HCL pH8.3, 200mM MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.14 42.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.466 α = 62.03 b = 48.829 β = 84.88 c = 49.356 γ = 85.95
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-12-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 50 94.2 0.036 33.3 3.7 82565
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.18 1.22 87.5 0.208 6 3.5 7690
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZEW 1.2 20 75010 3937 94.75 0.15679 0.15562 0.156 0.17864 0.1787 RANDOM 15.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.06 0.47 -0.3 -0.06 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.066 r_dihedral_angle_3_deg 11.468 r_dihedral_angle_1_deg 7.084 r_sphericity_free 3.377 r_sphericity_bonded 3.056 r_scangle_it 2.65 r_scbond_it 2.009 r_mcangle_it 1.49 r_rigid_bond_restr 1.252 r_angle_refined_deg 1.241
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.066 r_dihedral_angle_3_deg 11.468 r_dihedral_angle_1_deg 7.084 r_sphericity_free 3.377 r_sphericity_bonded 3.056 r_scangle_it 2.65 r_scbond_it 2.009 r_mcangle_it 1.49 r_rigid_bond_restr 1.252 r_angle_refined_deg 1.241 r_mcbond_it 0.972 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.125 r_xyhbond_nbd_refined 0.109 r_angle_other_deg 0.084 r_chiral_restr 0.084 r_nbtor_other 0.077 r_metal_ion_refined 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2261 Nucleic Acid Atoms Solvent Atoms 520 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing