☰ Navigation Tabs
Crystal structure of IsdG-N7A in complex with hemin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SQE PDB ENTRY 1SQE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.585 α = 77.57 b = 58.631 β = 74.39 c = 59.692 γ = 75.15
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2007-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 56.8 49184 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 0.061 6.9 5.3 257929
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SQE 1.8 56.8 46238 2480 90.51 0.19997 0.1982 0.1956 0.23446 0.2289 RANDOM 27.296
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 1.63 -0.24 0.28 -0.52 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.751 r_dihedral_angle_4_deg 17.017 r_dihedral_angle_3_deg 15.048 r_dihedral_angle_1_deg 6.297 r_scangle_it 3.514 r_scbond_it 2.246 r_mcangle_it 1.606 r_angle_refined_deg 1.389 r_mcbond_it 1 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.751 r_dihedral_angle_4_deg 17.017 r_dihedral_angle_3_deg 15.048 r_dihedral_angle_1_deg 6.297 r_scangle_it 3.514 r_scbond_it 2.246 r_mcangle_it 1.606 r_angle_refined_deg 1.389 r_mcbond_it 1 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.297 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3554 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection MOSFLM data reduction SCALA data scaling MOLREP phasing