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Crystal structure of SpCia1/Asf1 complex with Hip1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 25% PEG3350, 0.18M Ammonium Fluoride, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.16 43.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.013 α = 90 b = 48.086 β = 99.25 c = 63.247 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ mirror 2006-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.6 0.062 3.2 16590 16188 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 98.7 0.237 3.2 1621
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2CU9 2.4 50 13543 736 97.56 0.19756 0.19445 0.1952 0.25408 0.2522 RANDOM 29.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -1.12 -0.48 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.104 r_scangle_it 3.867 r_scbond_it 2.342 r_mcangle_it 1.794 r_angle_refined_deg 1.739 r_mcbond_it 0.981 r_angle_other_deg 0.87 r_nbd_other 0.244 r_symmetry_vdw_other 0.244 r_nbd_refined 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.104 r_scangle_it 3.867 r_scbond_it 2.342 r_mcangle_it 1.794 r_angle_refined_deg 1.739 r_mcbond_it 0.981 r_angle_other_deg 0.87 r_nbd_other 0.244 r_symmetry_vdw_other 0.244 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.184 r_symmetry_hbond_refined 0.176 r_symmetry_vdw_refined 0.175 r_chiral_restr 0.102 r_nbtor_other 0.089 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2778 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing